mrparse.mr_search_model module

Created on 18 Oct 2018

@author: jmht

class SearchModelFinder(seq_info, hkl_info=None, pdb_dir=None, search_engine=None, phmmer_dblvl=None, hhsearch_exe=None, hhsearch_db=None)

Bases: object

find_homolog_regions()

find_model_regions()

homologs_as_dicts()

Return a list of per homlog dictionaries serializable to JSON

homologs_with_graphics()

List of homologs including PFAM graphics directives

This needs to be done better - the PFAM graphics shouldn’t be stored in the list of homologs - this was just done because it made development quicker. The list of homologs and PFAM graphics needs to be kept separate

models_as_dicts()

Return a list of per model dictionaries serializable to JSON

models_with_graphics()

List of models including PFAM graphics directives

This needs to be done better - the PFAM graphics shouldn’t be stored in the list of models - this was just done because it made development quicker. The list of models and PFAM graphics needs to be kept separate

prepare_homologs()

prepare_models()