mrparse.mr_hit module

Created on 18 Oct 2018

@author: jmht

class SequenceHit

Bases: object

property hit_extent

python list indexing so need to subtract 1

property hit_range

property length

property query_extent

python list indexing so need to add 1

property query_midpoint

property query_range

property region_id

property region_index

find_hits(seq_info, search_engine='phmmer', hhsearch_exe=None, hhsearch_db=None, phmmer_dblvl=95)

run_hhsearch(seq_info, hhsearch_exe, hhsearch_db)

run_phmmer(seq_info, dblvl=95)

sort_hits_by_size(hits, ascending=False)