mrparse.mr_alphafold module¶

Created on 23 Jul 2021

@author: hlasimpk

class ModelData[source]¶

Bases: object

OBJECT_ATTRIBUTES = ['hit', 'region']¶

property length¶

property model_id¶

property name¶

property query_start¶

property query_stop¶

property range¶

property region_id¶

property region_index¶

property score¶

property seq_ident¶

property static_dict¶: Return a self representation with all properties resolved, suitable for JSON

exception PdbModelException[source]¶: Bases: Exception

calculate_avg_plddt(struct)[source]¶

calculate_quality_h_score(struct)[source]¶

calculate_quality_threshold(struct, plddt_threshold=70)[source]¶

calculate_sum_plddt(struct)[source]¶

convert_plddt_to_bfactor(struct)[source]¶

download_model(pdb_name)[source]¶: Download AlphaFold2 model

get_plddt(struct)[source]¶

get_plddt_regions(struct, seqid_range)[source]¶

models_from_hits(hits)[source]¶

prepare_pdb(hit)[source]¶: Download pdb or take file from cache trucate to required residues calculate the MW